Change historyΒΆ
1.33 (19 June 2018)
- Added ngmlr support.
** 1.32 (18 June 2018)**
- Added minimap2 support.
1.25 (7 June 2017)
- Added GraphMap support.
- Fix for trailing / on -f option.
- Fix for barcoding bug.
1.22 (5 May 2017)
- Fixes for comparison mode.
- Slurmit script added for NanoOK RT.
1.20 (13 Apr 2017)
- Better Albacore support.
- New -minquality option for filtering pass/fail reads.
1.17 (30 Mar 2017)
- Detection of albacore directory structure.
1.15 (17 Mar 2017)
- Auto-detection of directory structure - barcodes, batch_ etc.
1.14 (14 Mar 2017)
- Updates to support MinKNOW 1.4.2 directory structure.
- Fixed bug in R graph plotting.
- Better error checking in R scripts.
- Option to merge reads into single file.
0.95 (2 Nov 2016)
- Fixed issues with 1D report generation.
- Added warnings about .sizes file.
- New real-time watcher option for BAMBI project. Currently, this is not general purpose, but will be enabled in future release.
- Created new Dockerfile and re-built Docker images.
0.79 (7 Oct 2016)
- Added support for barcoded runs.
0.76 (7 Sep 2016)
- Fixed issue with badly formatted reference files.
- Fixed issue with grid.edit in R.
- More descriptive error messages.
- Option for 1D only processing for new rapid kit.
- Template only and complement only options.
- Updated help text.
0.72 (13 May 2016)
- New option to store original FAST5 path in FASTA output file (for nanopolish).
- Fixed issue with alignerparams not being passed through.
- Enabled extraction of 2D only reads.
- Better detection of old/new style directory structure.
- Various bug fixes.
0.62 (3 Dec 2015)
- Fixed extract bug that had been introduced with previous version.
0.61 (27 Nov 2015)
- Had to roll back from using HDF5 library due to cross-platform JNI issues.
- Otherwise, all functionality as of 0.60, including use of NANOOK_DIR.
0.60 (26 Nov 2015)
- Added support for Metrichor changes to FAST5 output format.
- Added support for multiple analyses in 1 file (i.e. /Analyses/Basecall_2D_XXX). New option -basecallindex to support it, but default behaviour is latest (highest numbered analysis).
- Moved from using HDF5 command line tool to using HDF5 Java library.
- Replaced the NANOOK_SCRIPT_DIR environment variable with a NANOOK_DIR one and slightly changed installation process.