Change historyΒΆ

1.33 (19 June 2018)

  • Added ngmlr support.

** 1.32 (18 June 2018)**

  • Added minimap2 support.

1.25 (7 June 2017)

  • Added GraphMap support.
  • Fix for trailing / on -f option.
  • Fix for barcoding bug.

1.22 (5 May 2017)

  • Fixes for comparison mode.
  • Slurmit script added for NanoOK RT.

1.20 (13 Apr 2017)

  • Better Albacore support.
  • New -minquality option for filtering pass/fail reads.

1.17 (30 Mar 2017)

  • Detection of albacore directory structure.

1.15 (17 Mar 2017)

  • Auto-detection of directory structure - barcodes, batch_ etc.

1.14 (14 Mar 2017)

  • Updates to support MinKNOW 1.4.2 directory structure.
  • Fixed bug in R graph plotting.
  • Better error checking in R scripts.
  • Option to merge reads into single file.

0.95 (2 Nov 2016)

  • Fixed issues with 1D report generation.
  • Added warnings about .sizes file.
  • New real-time watcher option for BAMBI project. Currently, this is not general purpose, but will be enabled in future release.
  • Created new Dockerfile and re-built Docker images.

0.79 (7 Oct 2016)

  • Added support for barcoded runs.

0.76 (7 Sep 2016)

  • Fixed issue with badly formatted reference files.
  • Fixed issue with grid.edit in R.
  • More descriptive error messages.
  • Option for 1D only processing for new rapid kit.
  • Template only and complement only options.
  • Updated help text.

0.72 (13 May 2016)

  • New option to store original FAST5 path in FASTA output file (for nanopolish).
  • Fixed issue with alignerparams not being passed through.
  • Enabled extraction of 2D only reads.
  • Better detection of old/new style directory structure.
  • Various bug fixes.

0.62 (3 Dec 2015)

  • Fixed extract bug that had been introduced with previous version.

0.61 (27 Nov 2015)

  • Had to roll back from using HDF5 library due to cross-platform JNI issues.
  • Otherwise, all functionality as of 0.60, including use of NANOOK_DIR.

0.60 (26 Nov 2015)

  • Added support for Metrichor changes to FAST5 output format.
  • Added support for multiple analyses in 1 file (i.e. /Analyses/Basecall_2D_XXX). New option -basecallindex to support it, but default behaviour is latest (highest numbered analysis).
  • Moved from using HDF5 command line tool to using HDF5 Java library.
  • Replaced the NANOOK_SCRIPT_DIR environment variable with a NANOOK_DIR one and slightly changed installation process.